PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0126s0320.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 217aa    MW: 23627.3 Da    PI: 8.5043
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0126s0320.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-202980156
                     AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                            ++y+GVr ++ +g+++AeIrd ++    ++r++lg+f++ae+Aa+a++ a+++l+g+
  SapurV1A.0126s0320.1.p 29 PRYRGVRKRP-WGKFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDTAARSLRGA 80
                            68********.**********883....5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-122979IPR001471AP2/ERF domain
CDDcd000187.00E-322989No hitNo description
SuperFamilySSF541711.83E-223089IPR016177DNA-binding domain
PROSITE profilePS5103223.4993087IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-323089IPR001471AP2/ERF domain
SMARTSM003801.8E-363093IPR001471AP2/ERF domain
PRINTSPR003674.1E-113142IPR001471AP2/ERF domain
PRINTSPR003674.1E-115369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MGRTRTTTKQ AEDPNGSATQ NMLVIAKEPR YRGVRKRPWG KFAAEIRDPW KKTRVWLGTF  60
DSAEDAARAY DTAARSLRGA KAKTNFPTSA TNQLFNHPSQ DPADPFLDHH SINPQRPTSS  120
SLSSTVESFS GPRPLQPTTM KSGSGPRRSH PRIPPVVPED CHSDCDSSSS VVDDRDIASA  180
ASSLCRKPLP FDLNLPPLDQ VDFGSGDDLH CTALCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-222687163ATERF1
3gcc_A3e-222687163ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1468370.0EF146837.1 Populus trichocarpa clone WS01214_L17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298817.11e-110Ethylene responsive element binding factor 3 family protein
SwissprotO803399e-55ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLJ7LF141e-110J7LF14_POPCA; ERF3
STRINGPOPTR_0001s36610.11e-109(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.17e-30ethylene responsive element binding factor 3